PUBLICATION LIST

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1 PUBLICATION LIST Anssi Vainikka A) Peer-reviewed publications (65) 65. Härkönen, L., Hyvärinen, P., Mehtätalo, L. & Vainikka, A. 2017: Growth, survival and social learning in the first hatchery generation of Eurasian perch (Perca fluviatilis). Aquaculture, 466: Huusko, A., Vainikka, A., Syrjänen, J.T., Orell, P., Louhi, P. & Vehanen, T. 2017: Life-history of the adfluvial brown trout (Salmo trutta L.) in eastern Fennoscandia. In: Brown trout. Biology, Ecology and Management (Eds. Lobón-Cerviá, J. & Sanz, N.) Elsevier, in press. ISBN: Syrjänen, J.T., Vainikka, A., Louhi, P. Huusko, A., Orell, P. & Vehanen, T. 2017: History, conservation and management of adfluvial brown trout stocks in Finland. In: Brown trout. Biology, Ecology and Management (Eds. Lobón- Cerviá, J. & Sanz, N.) Elsevier, in press. ISBN: Vainikka, A., Olin, M., Ruuhijärvi, J., Huuskonen, H., Eronen, R. & Hyvärinen, P. 2017: Model-based evaluation of the management of pikeperch (Sander lucioperca) stocks using minimum and maximum size limits. Boreal Environment Research, 22: Härkönen, L., Hyvärinen, P., Niemelä, P.T., Vainikka, A. 2016: Behavioural variation in Eurasian perch populations with respect to relative catchability. Acta Ethologica, 19: Jussila, J., Kokko, H., Makkonen, J., Westerbacka, A., Vainikka, A. & Kortet R. 2016: Rapuruttoloinen monimuotoinen ja muuntautumiskykyinen taudinaiheuttaja. Luonnon Tutkija, 120: Vainikka, A., Tammela, I., Hyvärinen, P. 2016: Does boldness explain vulnerability to angling in Eurasian perch Perca fluviatilis? Current Zoology, 62: DiRienzo, N., Niemelä, P.T., Skog, A., Vainikka, A., Kortet, R. 2015: Juvenile pathogen exposure affects the presence of personality in adult field crickets. Frontiers in Ecology and Evolution, 3: 36. doi: /fevo Jussila, J., Ruokonen, T., Syväranta, J., Kokko, H., Vainikka, A., Makkonen, J. & Kortet, R. 2015: It takes time to see the menu from the body: an experiment on stable isotope composition of freshwater crayfishes. Knowledge and Management of Aquatic Ecosystems, 416: 25. doi: /kmae/ Kokkonen, E., Vainikka, A. & Heikinheimo, O. 2015: Probabilistic maturation reaction norm trends reveal decreased size and age at maturation in an intensively harvested stock of pikeperch Sander lucioperca. Fisheries Research, 167: Kortet, R., Sirkka, I, Lai Y-T., Vainikka, A. & Kekäläinen, J. 2015: Personality differences in two minnow populations that differ in their parasitism and predation risk. Frontiers in Ecology and Evolution, 3: 9. doi: /fevo Gruber, C., Vainikka, A., Hirvonen, H., Rantala, M.J. & Kortet, R. 2014: Endogenous seasonal variation in the encapsulation response of the noble crayfish (Astacus astacus). Annales Zoologici Fennici, 51: Gruber, C., Kortet, R., Vainikka, A., Hyvärinen, P., Rantala, M.J., Pikkarainen, A., Jussila, J., Makkonen, J., Kokko, H. & Hirvonen, H. 2014: Variation in 1

2 resistance to the invasive crayfish plague and immune defence in the native noble crayfish. Annales Zoologici Fennici, 51: Härkönen, L., Hyvärinen, P., Paappanen, J. & Vainikka, A. 2014: Explorative behavior increases vulnerability to angling in hatchery-reared brown trout Salmo trutta. Canadian Journal of Fisheries and Aquatic Sciences, 71: Huuskonen, H., Suhonen, A., Gruber, C., Vainikka, A., Hirvonen, H. & Kortet, R. 2014: Metabolic rate in the signal crayfish (Pacifastacus leniusculus) is temporally consistent and elevated at molting. Marine and Freshwater Behaviour and Physiology, 47: Jussila, J., Makkonen, J., Vainikka, A., Kortet, R. & Kokko, H. 2014: Crayfish plague dilemma: how to be a courteous killer? Boreal Environment Research, 19: Kekäläinen, J., Lai, Y.-T., Vainikka, A., Sirkka, I. & Kortet, R. 2014: Do brain parasites alter host personality? Experimental study in minnows. Behavioral Ecology and Sociobiology, 68: Kekäläinen, J., Podgorniak, T., Puolakka, T., Hyvärinen, P. & Vainikka, A. 2014: Invidually assessed boldness predicts European perch's Perca fluviatilis behaviour in shoals, but is not associated with the capture order or angling method. Journal of Fish Biology, 85: Kortet, R., Vainikka, A., Janhunen, M., Piironen, J. & Hyvärinen, P. 2014: Behavioral variation shows heritability in juvenile brown trout Salmo trutta. Behavioral Ecology and Sociobiology, 68: Laugen, A.T., Engelhard, G.H., Whitlock, R., Arlinghaus, R., Dankel, D., Dunlop, E.S., Eikeset, A.M., Enberg, K., Jørgensen, C., Matsumura, S., Nusslé, S., Urbach, D., Baulier, L., Boukal, D.S., Ernande, B., Johnston, F., Mollet, F., Pardoe, H., Therkildsen, N.O., Uusi-Heikkila, S., Vainikka, A., Heino, M., Rijnsdorp, A.D. & Dieckmann, U. 2014: Evolutionary impact assessment: Accounting for evolutionary consequences of fishing in an ecosystem approach to fisheries management. Fish & Fisheries, 15: Makkonen, J., Kokko, H., Vainikka, A., Kortet, R., Jussila, J. 2014: Dose-dependent mortality of the noble crayfish (Astacus astacus) to different strains of the crayfish plague (Aphanomyces astaci). Journal of Invertebrate Pathology, 115: Heino, M., Baulier, L, Boukal, D.S., Ernande, B., Johnston, F.D., Mollet, F., Pardoe, H., Therkildsen, N.O., Uusi-Heikkilä, S., Vainikka, A., Arlinghaus, R., Dankel, D.J., Dunlop, E.S., Eikeset, A.M., Enberg, K., Engelhard, G.H., Jørgensen, C., Laugen, A.T., Matsumura, S., Nusslé, S., Urbach, D., Whitlock, R., Rinjnsdrop, A.D. & Dieckmann, U. 2013: Can fisheriesinduced evolution shift reference points for fisheries management? ICES Journal of Marine Science, 70: Mollet, F.M., Engelhard, G.H., Vainikka, A., Laugen, A.T., Rijnsdorp, A.D. & Ernande, B. 2013: Spatial variation in growth, maturation schedules and reproductive investment of female sole Solea solea in the Northeast Atlantic. Journal of Sea Research, 84: Niemelä, P.T., Dingemanse, N.J., Alioravainen, N., Vainikka, A., Kortet, R. 2013: Personality pace-of-life hypothesis: testing genetic associations among personality and life history. Behavioral Ecology, 24: Niemelä, P.T., Vainikka, A., Forsman, J.T., Loukola, O.J. & Kortet, R. 2013: How does variation in the environment and individual cognition explain the 2

3 existence of consistent behavioural differences? Ecology and Evolution, 3: Kortet, R., Niemelä, P.T., Vainikka, A. & Laakso, J. 2012: Females prefer bold males; an analysis of boldness, mate choice and bacterial resistance in the field cricket, Gryllus integer. Ecological Immunology and Parasitology, 1: doi: /epi/ Niemelä, P.T., Vainikka, A., Hedrick, A.V. & Kortet, R. 2012: Integrating behavior with life history: boldness of the field cricket, Gryllus integer, during ontogeny. Functional Ecology, 26: Niemelä, P.T., Vainikka, A., Lahdenperä, S. & Kortet, R. 2012: Nymphal density, behavioral development, and life history in a field cricket. Behavioural Ecology and Sociobiology, 66: Pulkkinen, K. & Vainikka, A. 2012: Epidemiologia ja vesieliöiden loisten torjunta. In Suomen kalojen loiset (eds. Valtonen, E.T., Hakalahti, T., Karvonen, A., Pulkkinen, K.) Gaudeamus, Helsinki, pp Vainikka, A., Huusko, R., Hyvärinen, P., Korhonen, P.K., Laaksonen, T., Koskela, J., Vielma, J., Hirvonen, H. & Salminen, M. 2012: Food restriction prior to release reduces precocious maturity and improves migration tendency of Atlantic salmon smolts. Canadian Journal of Fisheries and Aquatic Sciences, 69: Vainikka, A. & Hyvärinen, P. 2012: Ecologically and evolutionarily sustainable fishing of the pikeperch Sander lucioperca: Lake Oulujärvi as an example. Fisheries Research, 113: Vainikka, A., Koskimäki, J., Niemelä, P.T. & Kortet, R. 2012: Composition of the Eurasian perch (Perca fluviatilis) catches in ice fishing: Does capture order predict body size? Fisheries Research, : Vainikka, A. & Seppälä, O. 2012: Isäntä-loissuhteiden mallinnus: teoriaa, menetelmiä ja vesiviljelysovelluksia. In Suomen kalojen loiset (eds. Valtonen, E.T., Hakalahti, T., Karvonen, A., Pulkkinen, K.) Gaudeamus, Helsinki, pp Jussila, J., Makkonen, J., Vainikka, A., Kortet, R. & Kokko, H. 2011: Latent crayfish plague (Aphanomyces astaci) infection in a robust wild noble crayfish (Astacus astacus) population. Aquaculture, 321: Vainikka, A., Rantala, M.J., Niemelä, P., Hirvonen, H. & Kortet, R. 2011: Boldness as a consistent personality trait in the noble crayfish, Astacus astacus. Acta Ethologica, 14: Kortet, R., Hedrick, A.V. & Vainikka, A. 2010: Parasitism, predation and the evolution of animal personalities. Ecology Letters, 13: Vainikka, A., Kallio-Nyberg, I., Heino, M. & Koljonen, M-L. 2010: Divergent trends in life-history traits between Atlantic salmon, Salmo salar of wild and hatchery origin in the Baltic Sea. Journal of Fish Biology, 76: Pardoe, H., Vainikka, A., Thórdarson, G., Marteinsdóttir, G. & Heino, M. 2009: Temporal trends in probabilistic maturation reaction norms and growth of Atlantic cod (Gadus morhua L.) on the Icelandic shelf. Canadian Journal of Fisheries and Aquatic Sciences, 66: Vainikka, A., Gårdmark, A., Bland, B. & Hjelm, J. 2009: Two- and threedimensional maturation reaction norms for the eastern Baltic cod, Gadus morhua. ICES Journal of Marine Science, 66: Vainikka, A., Mollet, F., Casini, M., Gårdmark, A. 2009: Spatial variation in growth, condition and maturation reaction norms of the Baltic herring (Clupea harengus membras). Marine Ecology Progress Series, 383:

4 25. Vainikka, A., Taskinen, J., Löytynoja, K., Jokinen, I. & Kortet, R. 2009: Measured immunocompetence relates to the proportion of dead parasites in a wild roach population. Functional Ecology, 23: Jørgensen, C., Enberg, K., Dunlop, E.S., Arlinghaus, R., Boukal, D.S., Brander, K., Ernande, B., Gårdmark, A., Johnston, F., Matsumura, S., Pardoe, H., Raab, K., Silva, A., Vainikka, A., Dieckmann, U., Heino, M. & Rijnsdorp, A.D. 2008: The role of fisheries-induced evolution response. Science 320: Korkea-aho, T.L., Vainikka, A., Kortet, R. & Taskinen, J. 2008: Factors affecting between-lake variation in the occurrence of epidermal papillomatosis in roach, Rutilus rutilus (L.). Journal of Fish Diseases, 31: Kortet, R. & Vainikka, A. 2008: Seasonality of innate immunity; evolutionary aspects and latest updates. In New Research on Innate Immunity (eds. Durand M. & Morel C.V.) Nova Science Publishers, NY, pp ISBN Jørgensen, C., Enberg, K., Dunlop, E.S., Arlinghaus, R., Boukal, D.S., Brander, K., Ernande, B., Gårdmark, A., Johnston, F., Matsumura, S., Pardoe, H., Raab, K., Silva, A., Vainikka, A., Dieckmann, U., Heino, M. & Rijnsdorp, A.D. 2007: Managing Evolving Fish Stocks. Science, 318: Vainikka, A., Rantala, M.J. Seppälä, O. & Suhonen, J. 2007: Do male mealworm beetles, Tenebrio molitor, sustain the honesty of pheromone signals under immune challenge? Acta Ethologica, 10: Ylönen, H., Kortet, R., Myntti, J. & Vainikka, A. 2007: Predator odour recognition and antipredatory response in fish: Does the prey know the predator diel rhythm? Acta Oecologia, 31: Korkea-aho, T.L., Partanen, J.M., Kiviniemi, V., Vainikka, A. & Taskinen, J. 2006: Association between environmental stress and epidermal papillomatosis of roach Rutilus rutilus. Diseases of Aquatic Organisms, 72: Korkea-Aho, T., Vainikka, A. & Taskinen, J. 2006: Factors affecting the intensity of epidermal papillomatosis in populations of roach, Rutilus rutilus L., estimated as scale coverage. Journal of Fish Diseases, 29: Rantala, M.J., Eriksson, C.J.P., Vainikka, A. & Kortet R. 2006: Male steroid hormones and female preference for male body odor. Evolution and Human Behavior, 27: Vainikka, A. Seppälä, O., Löytynoja, K. & Rantala, M.J. 2006: Fitness consequences of female preference for male pheromones in Tenebrio molitor. Evolutionary Ecology Research, 8: Vainikka, A., Jokinen, E.I., Kortet, R., Paukku, S., Pirhonen, J., Rantala, M.J. & Taskinen, J. 2005: Effects of testosterone and -glucan on immune functions in tench Tinca tinca (L.). Journal of Fish Biology, 66: Vainikka, A., Kortet, R., Paukku, S., Rantala, M.J. & Pirhonen, J. 2005: What do male tench, Tinca tinca, advertise with morphological ornaments? Acta Ethologica, 8: Vainikka, A., Ylönen, H., Jokelainen, T. & Kortet, R. 2005: Predation risk allocation or direct vigilance response in the predator interaction between perch (Perca fluviatilis) and pike (Esox lucius)? Ecology of Freshwater Fish, 14: Kortet, R., Taskinen, J., Vainikka, A. & Ylönen, H. 2004: Breeding tubercles, papillomatosis and dominance behaviour of male roach (Rutilus rutilus) during the spawning period. Ethology, 110: Kortet, R., Vainikka, A., Rantala, M.J., Myntti, J. & Taskinen, J. 2004: In vitro embryo survival and early viability of larvae in relation to male sexual 4

5 ornaments and parasite resistance in roach, Rutilus rutilus L. Journal of Evolutionary Biology, 17: Kortet, R., Vainikka, A., Rantala, M.J. & Taskinen, J. 2004: Sperm quality, secondary sexual characters and parasitism in roach (Rutilus rutilus). Biological Journal of the Linnean Society, 81: Vainikka, A., Jokinen, E.I., Kortet, R. & Taskinen J. 2004: Gender- and seasondependent relationships between testosterone, oestradiol and immune functions in wild roach Rutilus rutilus L. Journal of Fish Biology. 64: Vainikka, A. Kortet, R. & Taskinen, J. 2004: Epizootic cutaneous papillomatosis, cortisol and male ornamentation during and after breeding in roach Rutilus rutilus. Diseases of Aquatic Organisms, 60: Kortet, R., Vainikka, A., Rantala, M.J., Jokinen, I., Taskinen, J. 2003: Sexual ornamentation, androgens and papillomatosis in male roach (Rutilus rutilus). Evolutionary Ecology Research, 5: Kortet, R., Vainikka, A. & Taskinen, J. 2003: Experimental study on the effect of epidermic papillomatosis on survival of the freshwater fish Rutilus rutilus. Diseases of Aquatic Organisms, 57: Rantala, M.J., Kortet, R., Kotiaho, J.S., Vainikka, A. & Suhonen, J. 2003: Condition dependence of pheromones and immune function in the grain beetle Tenebrio molitor. Functional Ecology 17: Rantala, M.J., Vainikka, A. & Kortet, R. 2003: The role of juvenile hormone in immune function and pheromone production trade-offs: a test of the immunocompetence handicap principle. Proceedings of the Royal Society of London, Series B, 270: Kortet, R., Taskinen, J., Vainikka, A. 2002: Epizootic cutaneous papillomatosis in roach Rutilus rutilus: sex and size dependence, seasonal occurrence and between populations differences. Diseases of Aquatic Organisms, 52: Rantala, M.J., Jokinen, I., Kortet, R., Vainikka, A. & Suhonen, J. 2002: Do pheromones reveal male immunocompetence? Proceedings of the Royal Society of London, Series B, 269: Submitted manuscripts currently under evaluation (3) Alioravainen, N., Hyvärinen, P., Kortet, R., Härkönen, L. & Vainikka, A. 2017: Using controlled crossing with wild fish against domestication: behaviour, growth and survival of F1-hybrids. Submitted to Canadian Journal of Fisheries and Aquatic Sciences. Lemopoulos, A., Uusi-Heikkilä, S., Vasemägi, A., Huusko, A., Kokko, H. & Vainikka, A. 2017: Genome-wide divergence patterns support fine-scaled genetic structuring associated with migration tendency in brown trout. Submitted to Canadian Journal of Fisheries and Aquatic Sciences. Vainikka, A., Jakubaviciute, E. & Hyvärinen, P. 2017: Synchronous decline of three morphologically distinct whitefish (Coregonus lavaretus) stocks in Lake Oulujärvi with concurrent changes in the fish community. Revision submitted to Fisheries Research. B) Non-refereed scientific publications (81) Full articles and a book preface (8) 5

6 8. Hyvärinen, P., Jakubaviciute, E. &Vainikka, A. 2016: Oulujärveen istutettujen planktonsiikojen istutustulokseen vaikuttavat tekijät. Liite 7. In: Oulujärven kalataloustarkkailu v Fortum Power and Heat Oy, UPM-Kymmene Oyj, Kajaanin Kaupunki, Paltamon Kunta, Vapo Oy, Luke/Kainuun Kalantutkimus. Taskila, E. Pöyry Finland Oy. 7. Vainikka, A. 2015: Preface in Biological Invasions in Changing Ecosystems. Vectors, Ecological Impacts, Management and Predictions. Edited by João Canning- Clode. 488 pp. De Gruyter Open, Warsaw, Poland. 6. Härkönen, L., Hyvärinen, P., Aro, V., Eela, L., Eronen, A., Strandberg, U. & Vainikka, A. 2015: Laitosviljelyyn soveltuvan ahvenen emokalaston tuotanto. Loppuraportti, Lapin ELY-keskus. Laitosviljelyyn-soveltuvan-ahvenen-emokalaston-tuotanto.html 5. Vainikka, A., Härkönen, L. & Hyvärinen, P. 2015: Ahvenen viljelyn mahdollisuudet Suomessa. Loppuraportti, Kainuun ELY-keskus. Ahvenen-viljelyn-mahdollisuudet-suomessa.html 4. Hyvärinen, P., Laaksonen, T., Korhonen, P., Moilanen, J., Karvonen, P., Rodewald, P., Hirvonen, H., Vainikka, A Merilohen vaelluspoikastutkimukset Oulujärvellä v Kainuun vaelluskalahanke. Tutkimusraportti. Riista- ja kalatalouden tutkimuslaitos. 14 s. 3. Arlinghaus, R., Boukal, D., Dieckmann, U., Dunlop, E., Enberg, K., Ernande, B., Gårdmark, A., Heino, M., Johnston, F., Jørgensen, C., Matsumura, S., Pardoe, H., Raab, K., Rijnsdorp, A., Silva, A. & Vainikka, A. (group members in alphabetical order) 2007: Report of the Study Group on Fisheries-Induced Adaptive Change (SGFIAC). International Council for the Exploration of the Sea. 2. Olsson, J., Aho, T., Florin, A.-B., Vainikka, A., Bekkevold, D., Dannewitz, J., Hindar, K., Koljonen, M.-L., Laikre, L., Magnussen, E. & Pálsson, S. 2007: Genetic research on commercially exploited fish species in Nordic Countries. TemaNord 2007: Vainikka, A., Gårdmark, A., Bland, B. & Hjelm. J. 2006: Fishing-induced early reproduction at the cost of growth in the Baltic cod Gadus morhua? ICES CM 2006/H:09. Conference abstracts (76) 76. Alioravainen, N., Hyvärinen, P., Kortet, R., Härkönen, L. & Vainikka, A. 2017: Behaviour and survival of crossbred hatchery-reared brown trout Salmo trutta. NowPaS, Salmonid research network, Shaftesbury, England, 7 th -10 th March Book of abstracts. 75. Alioravainen, N., Hyvärinen, P., Kortet, R., Härkönen, L. & Vainikka, A. 2017: Behaviour and survival of outbred hatchery-reared brown trout Salmo trutta. OIKOS Finland conference for Ecologists and Evolutionary Biologists, 31 st January to 1 st February 2017, Helsinki, Finland. Abstract book. 74. Härkönen, L., Hyvärinen, P. & Vainikka, A. 2017: Angling-induced selection in Eurasian perch Perca fluviatilis and brown trout Salmo trutta. Cal-Neva Chapter of the American Fisheries Society 51 st Annual Meeting, April 5-7, 2017, Eureka, CA. 73. Prokkola, J.M., Lemopoulos, A., Hyvärinen, P., Koskiniemi, J., Uusi-Heikkilä, S., Koljonen, M-L., Vainikka, A. 2017: More is more? A comparison of 16 microsatellites and 3500 SNPs for elucidating the genetic structure and 6

7 diversity of small populations of brown trout. NowPaS, Salmonid research network, Shaftesbury, England, 7 th -10 th March Book of abstracts. 72. Härkönen, L., Hyvärinen, P., Alioravainen, N. & Vainikka, A. 2016: Anglinginduced selection mediated by fish behaviour implications for reproductive potential in Eurasian perch (Perca fluviatilis). ICES ASC, Riga, Latvia, September Lemopoulos, A., Uusi-Heikkilä, S., Huusko, A., Hyvärinen, P. & Vainikka, A. 2016: RADSeq genetics of resident and migratory brown trout within and among rivers. Nordic OIKOS Conference for Ecologists and Evolutionary Biologists, 2 nd -4 th February 2016, Turku, Finland. Abstract book. 70. Lemopoulos, A., Uusi-Heikkilä, S., Vasemägi, A., Huusko, A., Hyvärinen, P. & Vainikka, A. 2016: Understanding genetic population structure is a necessity for sustainable harvesting of fish and game species. 2 nd Finnish Molecular Ecology & Evolution Symposium. Abstract book. 69. Vainikka, A., Härkönen, L., Hyvärinen, P., Kekäläinen, J. & Väätäinen, R. 2016: Angling-induced selection in Eurasian perch Perca fluviatilis and brown trout Salmo trutta. Nordic OIKOS Conference for Ecologists and Evolutionary Biologists, 2 nd -4 th February 2016, Turku, Finland. Abstract book. 68. Eronen, R., Vainikka, A., Huuskonen, H., Kiljunen, M., Syväranta, J. & Kortet, R. 2015: Diet of pikeperch (Sander lucioperca) in Lake Höytiäinen: stomach contents vs. stable isotope analysis. 4 th European Large Lakes Symposium, August 24-28, 2015, Joensuu, Finland, p Makkonen, J., Jussila, J., Gökmen, G., Ward, J., Umek, J., Kortet, R., Vainikka, A. & Kokko, H. 2015: Novel Aphanomyces sp. isolates from Lake Tahoe (USA) signal crayfish (Pacifastacus leniusculus) Oomycete molecular genetics network. Pacific Grove, California, USA March p Makkonen, J., Kokko, H., Gökmen, G., Ward, J., Umek, J., Vainikka, A., Kortet, R., Jussila, J. 2015: Novel Aphanomyces sp. isolates from Lake Tahoe (USA) signal crayfish (Pacifastacus leniusculus). European Crayfish Conference: Research and Management, April 8 12, 2015, Landau, Germany. Abstract proceedings, p Makkonen, J., Kokko, H., Vainikka, A., Kortet, R., Jussila, J. 2015: Finnish noble crayfish (Astacus astacus) represent a single haplotype lineage. The Oikos Finland Meeting for Ecologists and Evolutionary Biologists, February 10-11, 2015, Joensuu, Finland. Abstract proceedings, p Jussila, J., Vainikka, A., Kortet, R., Kokko, H. & Makkonen, J. 2015: Active spreading of an invasive species challenges ecosystem-based management of crayfisheries. EIFAAC Symposium, Recreational Fisheries in an Era of Change, Lillehammer, Norway, June. p Vainikka, A., Huuskonen, H., Eronen, R., Hyvärinen, P., Olin, M. & Ruuhijärvi, J. 2015: Size limit -based management of pikeperch (Sander lucioperca) in Finnish lakes with respect to life-history variation. 4 th European Large Lakes Symposium, August 24-28, 2015, Joensuu, Finland, p Vainikka, A., Väätäinen, R., Härkönen, L., Kortet, R. & Hyvärinen, P. 2015: Selectivity of angling for behaviour in Eurasian perch Perca fluviatilis. EIFAAC Symposium, Recreational Fisheries In An Era of Change, Lillehammer, Norway, June, p Härkönen L, Hyvärinen, P., Paappanen, J., Vainikka A. 2014: Explorative personality and standard hatchery rearing increase vulnerability to angling in brown trout (Salmo trutta). Ecology of fish in lakes and reservoirs Ceske Budejovice, Czech Republic, September

8 60. Jakubaviciute, E., Vainikka, A. & Hyvärinen, P. 2014: Fisheries impacts on different whitefish (Coregonus lavaretus) morphs in Lake Oulujärvi. World Conference on Natural Resource Modelling, July 8-11, Vilnius, Lithuania. Abstracts and conference program. 59. Makkonen, J., Kokko, H., Gökmen, G., Vainikka, A., Kortet, R. & Jussila, J. 2014: Novel Aphanomyces sp. isolates from Lake Tahoe (USA) signal crayfish (Pacifastacus leniusculus). International Association of Astacology - Biennial Symposium, Sapporo, Hokkaido, Japan, September 22-26, Vesterbacka, A., Martin, F., Jussila, J., Diéguez-Uribeondo, J., Tyler, B., Rush, C., van West, P., Makkonen, J., Vainikka, A., Kortet, R., & Kokko, H. 2014: Assembly and comparison of Aphanomyces astaci mt-genomes illustrate high diversity among genotypes. Oomycete Molecular Genetics Network Meeting, 2 nd July th July Carrow Road, Norwich, NR1 1JE, UK. Book of abstracts. 57. Väätäinen, R., Torrellas Arnedo, M., Huuskonen, H., Kekäläinen, J., Kortet, R. & Vainikka, A. 2014: Does standard metabolic rate explain personality variation in Eurasian perch (Perca fluviatilis L.)? 7 th World Recreational Fishing Conference, September 1 to , Campinas, State of Sao Paolo, Brazil. Book of abstracts. 56. Kokko, H., Vesterbacka, A., Blande, D., Makkonen, J., Kortet, R., Vainikka, A. & Jussila, J. 2013: Transcriptomes of Aphanomyces astacis isolates express a broad array of RxLR-effector genes. 16th International Conference on Diseases of Fish and Shellfish, Tampere, Finland, September 2 6, Kortet, R., Hedrick, A.V. & Vainikka, A. 2013: The effect of parasitism in the evolution of consistent individual behavioural differences. Behaviour 2013, Joint meeting of the 33rd International Ethological Conference (IEC) & the Association for the Study of Animal Behaviour (ASAB), Abstract Book, 4th - 8th August 2013, The Sage, Newcastle-Gateshead UK. 54. Niemelä, P., Vainikka, A., Forsman, J., Loukola, O. & Kortet, R. 2013: How does variation in the environment and individual cognition explain the existence of consistent behavioral differences? Behaviour 2013, Joint meeting of the 33rd International Ethological Conference (IEC) & the Association for the Study of Animal Behaviour (ASAB), Abstract Book, 4th - 8th August 2013, The Sage, Newcastle-Gateshead UK. 53. Kortet, R., Niemelä, P.T., Vainikka, A. & Laakso, J. 2012: Boldness, mate choice and bacterial resistance in the field cricket Gryllus integer. XXIV International Congress of Entomology. August 19-25, 2012, Daegu. Abstract CD, Abstract #PS3M Makkonen, J., Kokko, H., Vainikka, A., Kortet, R., Jussila, J. 2012: Differences in the virulence of crayfish plague (Aphanomyces astaci) strains confirmed with infection trials. IAA 19, 2012 Insbruck, Austria, Book of Abstracts, p Niemelä, P.T., Dingemanse, J.N., Alioravainen, N., Vainikka, A. & Kortet, R. 2012: Genetic associations between immune defence, boldness and life-history. 14 th International Behavioral Ecology Congress (ISBE), , Lund, Sweden. The Abstract book, p Vainikka, A., Hyvärinen, P., Olin, M. & Ruuhijärvi, J. 2012: How do alternative minimum size limits perform in the management of pikeperch Sander lucioperca stocks differing in growth and maturation patterns? EIFAAC Symposium 2012, October, Hämeenlinna, Finland. Abstract. 49. Kokko, H., Makkonen, J., Vainikka, A., Kortet, R. & Jussila, J. 2011: Host-pathogen interactions: the search of oomycete effectors by next generation sequencing 8

9 of transcriptomes. Coevolution symposium, Jyväskylä, 4-7 October p Kortet, R., Hedrick, A. & Vainikka, A. 2011: Parasites and pathogens are important players in evolution of animal personality traits? The 86 th Annual Meeting of the American Society of Parasitologists, 1-4 th June, Anchorage, Alaska, USA. Program & Abstracts, p Kortet, R., Hedrick, A.V. & Vainikka, A. 2011: Parasites and pathogens as players in the evolution of animal personality traits. Behavior 2011 Joint meeting of the IEC and the ABS, July 25-30, Program & Abstracts, p Kortet, R., Hedrick, A.V. & Vainikka, A. 2011: How important are parasites and pathogens in the evolution of animal personality traits? Coevolution Symposium, Jyväskylä, 4-7 October 2011, p Makkonen, J., Kokko, H., Vainikka, A., Jussila, J. & Kortet, R. 2011: Noble crayfish (Astacus astacus) resistance against crayfish plague (Aphanomyces astaci). IX National Crayfish Seminar, Helsinki, CraySeminar Abstracts, p Mollet, F., Engelhard, G.H., Ernande, B., Vainikka, A. & Rijnsdorp, A.D. 2011: Geographic variation in growth and maturation schedules of female sole. The 8th International Flatfish Symposium, Netherlands, IJmuiden, 5-11 th November Niemelä, P., Vainikka, A., Hedrick, A.V. & Kortet, R. 2011: Integrating behavior with life-history: behavior of field cricket (Gryllus integer) during ontogeny. Behavior 2011 Joint meeting of the IEC and the ABS, July 25-30, Program & Abstracts, p Niemelä, P., Vainikka, A., Lahdenperä, S. & Kortet, R. 2011: Effect of larval density on the behavioural development and life-history in a field cricket. XIII th ESEB Congress Tuebingen, August All abstracts, p Niemelä, P., Vainikka, A., Lahdenperä, S. & Kortet, R. 2011: Nymphal density, behavioral development and life-history in a field cricket. 15 th Kaamos Symposium, , The Abstract Book, Oulu, p Vainikka, A., Gruber, C., Rantala, M.J., Kääriäinen, P., Hyvärinen, P., Hirvonen, H., Makkonen, J., Kokko, H., Jussila, J. & Kortet, R. 2011: What do simple measures of immunity tell and how they change with environment? IX National Crayfish Seminar, Helsinki, CraySeminar Abstracts, p Vainikka, A. & Hyvärinen, P. 2011: Ecologically and evolutionarily sustainable fishing of the pikeperch Sander lucioperca. 6 th World Recreational Fishing Conference. Berlin, Vainikka, A., Kortet, R. & Hedrick, A.V. 2011: Behavioural consistency arising from the state-dependent costs of parasitism and predation. XIII th ESEB Congress Tuebingen, August All abstracts, p Vainikka, A., Kortet, R. & Hedrick, A.V. 2011: Behavioural consistency arising from the state-dependent costs of parasitism and predation. Coevolution Symposium 4-7 October 2011, Jyväskylä. p Kortet, R., Hedrick, A, Niemelä, P., Lahdenperä, S., Gruber, C. & Vainikka, A. 2010: Personality in field crickets. ISBE2010, 13 th International Behavioral Ecology Congress. Perth, Australia. p Laugen, A.T., Engelhard, G.H., Whitlock, R., Arlinghaus, R., Dankel, D., Dunlop, E.S., Eikeset, A.M., Enberg, K., Jørgensen, C., Matsumura, S., Nusslé, S., Urbach, D., Baulier, L., Boukal, D.S., Ernande, B., Johnston, F., Mollet, F., Pardoe, F., Therkildsen, N.O., Uuqsi-Heikkilä, S., Vainikka, A., Heino, M., 9

10 Rijnsdorp, A.D. & Dieckmann, U. 2010: Evolutionary impact assessment: Accounting for evolutionary consequences of fishing in an ecosystem approach to fisheries management. Nordic Marine Sciences Conference in Strömstad, Sweden, in September Niemelä, P., Vainikka, A., Hedrick, A. & Kortet R. 2010: Consistency of hiding behavior in relation to ontogeny and life-history variables in the field cricket, Gryllus integer. 14 th Kaamos Symposium, The Abstract Book, p Vainikka, A., Koskimäki, J. & Kortet, R. 2010: Implications of animal personalities for recreational fisheries. DINFISH symposium, Ceske Budejovice, Czech Republic, Kortet, R., Vainikka, A., Rantala, M., Niemelä, P. & Hedrick, A.V. 2009: Behavioral variation in field crickets. 46th Annual Meeting of the ABS, June, Brazil. p Koskimäki, J., Vainikka, A. & Kortet, R. 2009: Big fish strike first- angling-induced selection against bold foraging behavior. 13 th Kaamos Symposium, , Program & Abstracts, Oulu, p Laugen, A.L., Engelhard, G.H., Whitlock, R., Arlinghaus, R., Baulier, L., Boukal, D.S., Dankel, R., Dunlop, E.S., Eikeset, A.M., Enberg, K., Ernande, B., Johnston, F., Jørgensen, C., Matsumura, S., Mollet, F., Nusslé, S., Pardoe, H., Therkildsen, N.O., Urbach, D., Uusi-Heikkilä, S., Vainikka, A., Heino, M., Rijnsdorp, A.D. & Dieckmann, U. 2009: Evolutionary impact assessment: Integrating evolutionary consequences of fishing into the ecosystem-approach to fisheries management. The 12 th Congress of the European Society for Evolutionary Biology. Turin, Italy, August p. 83. Abstract. 29. Niemelä, P., Vainikka, A. & Kortet R. 2009: Sources of behavioural syndromes. 13 th Kaamos Symposium, Oulu, Finland Program & Abstracts, Oulu, p Vainikka, A. & Kortet, R. 2009: Evolutionary effects of mortality on the investment into immunity in crayfishes. The 12 th Congress of the European Society for Evolutionary Biology. Turin, Italy, August Poster abstracts CD: Vainikka, A., Gårdmark, A., Hirvonen, H. & Kortet, R. 2009: How much should a crayfish invest in immune function? 13 th Kaamos Symposium, Oulu, Finland Program & Abstracts, Oulu, p Engelhard, G., Ernande, B., Mollet, F., Vainikka, A., Kell, L. & Rijnsdorp, A.D. 2008: Geographic variation in growth and maturation schedules of female sole. The 7 th International Flatfish Symposium. Sesimbra, Portugal, 2-7 November. 25. Pardoe, H., Dunlop, E.S., Vainikka, A., Heino, M. Þórðarson, G., Dieckmann, U. & Marteinsdóttir, G. 2008: Evolutionary effects of fishing on age and size at maturation of Icelandic cod: what role has stock structure played? 5th World Fisheries Congress Fisheries for Global Welfare and Environmental Conservation, Yokohama, Japan, October 20-24, Pardoe, H., Dunlop, E.S., Vainikka, A., Heino, M., Dieckmann, U. & Marteinsdóttir, G. 2008: Fisheries-induced evolution in maturation of Icelandic cod, and the influence of stock structure. Annual Meeting of American Fisheries Society, Ottawa, Canada, 17 th -21 st August. 23. Vainikka, A., Gårdmark, A., Brännström, Å., Boukal, D. & Dieckmann, U. 2008: Direct and indirect fisheries-induced evolution in a three-species community. 38 th Annual Meeting of American Fisheries Society, Ottawa, 10

11 Canada, August. 22. Taskinen, J., Vainikka, A., Jokinen, E.I., Löytynoja, K. & Kortet, R. 2007: Do measures of immunocompetence measure immunocompetence? 11th Congress of European Society for Evolutionary Biology, Uppsala, Sweden, August p Svedäng, H., Vitale, F. & Vainikka, A. 2007: Trends in age and size based probabilistic maturation reaction norms of cod (Gadus morhua L.) in the Kattegat and Sound correlate with variability in juvenile growth. Reproductive and Recruitment Processes of Exploited Marine Fish Stocks. 1-3 October, Lisbon, Portugal. 20. Vainikka, A., Gårdmark, A., Brännström, Å., Boukal, D. & Dieckmann, U. 2007: Population-level consequences of evolution in size at maturation in herring-like fishes utilizing one or two resource niches. 11th Congress of European Society for Evolutionary Biology, Uppsala, Sweden, August p Vainikka, A., Gårdmark, A., Brännström, Å., Boukal, D. & Dieckmann, U. 2007: Evolution of the size at maturation in herring-like fishes utilizing one or two resource niches. Workshop on Size-structured Population Models. Umeå, Sweden, October Vainikka, A. 2007: Evolutionarily sustainable fishing - Is it possible? 11 th Kaamos Symposium. Oulu, Finland Book of abstracts. 17. Korkea-Aho, T.L., Partanen, J.M., Kortet, R., Vainikka, A. & Taskinen, J. 2006: Papilloma disease of fish in pollution monitoring. European Large Lakes Symposium 2006, ecosystem changes and their ecological and socioeconomical impacts September, 2006, Tartu, Estonia. Programme and abstracts, p Korkea-Aho, T., Partainen, M., Vainikka, A., Kortet, R. & Taskinen, J. 2006: Kalojen papilloomatauti suurten järvien tilan ilmentäjänä. Suurjärviseminaari, Joensuu, , Book of abstracts, p Taskinen, J., Korkea-Aho, T., Partanen, M., Kiviniemi, V., Vainikka, A., & Kortet R. 2006: Kalojen loiset ja taudit: suurten ja pienten järvien välinen vertailu. Suurjärviseminaari, Joensuu, , Book of abstracts, p Taskinen, J., Korkea-Aho, T., Partanen, J.M., Kiviniemi, V., Vainikka, A. & Kortet, R. 2006: Fish parasites and diseases in relation to lake size. European Large Lakes Symposium 2006, ecosystem changes and their ecological and socioeconomical impacts September, 2006, Tartu, Estonia. Programme and abstracts, p Vainikka, A., Gårdmark, A., Bland, B. & Hjelm, J. 2006: Fisheries-induced changes in the condition-dependent maturation of the Baltic cod, Gadus morhua. 41st European Marine Biology Symposium, 4-8 September 2006, Cork, Ireland. 12. Vainikka, A., Gårdmark, A., Bland, B. & Hjelm, J. 2006: Fishing-induced early reproduction at the cost of growth in the Baltic cod Gadus morhua? ICES Annual Science Conference, September 2006, Maastricht, The Netherlands. H:09. p Korkea-Aho, T.L., Partanen, J.M., Kortet, R., Vainikka, A. & Taskinen, J. 2005: Papilloma disease of roach (Rutilus rutilus L.): an indicator of environmental stress. Seventh Finnish Conference of Environmental Sciences, Jyväskylä Korkea-Aho, T.L., Partanen, J.M., Kortet, R., Vainikka, A. & Taskinen, J. 2005: Papilloma disease of fish in pollution monitoring. Society of Environmental 11

12 Toxicology and Chemistry (SETAC) Europe 15th Annual Meeting, May 2005, Lille, France. Book of Abstracts p Vainikka, A., Kortet, R., Pirhonen, J. & Taskinen, J. 2005: Endocrine-mediated lifehistory trade-offs in cyprinid fishes. 10th Congress of European Society for Evolutionary Biology, Cracow, Poland, August p Kortet, R., Vainikka, A., Rantala, M.J. & Taskinen J. 2004: Parasitism, reproduction and sexual selection of roach, Rutilus rutilus L. 10 th Jubilee Congress of the International Society of Behavioural Ecology, Jyväskylä, Finland July p Rantala, M.J., Kortet, R. & Vainikka, A. 2004: A mechanism for immunocompetence handicap in insects. 10 th Jubilee Congress of the International Society of Behavioural Ecology, Jyväskylä, Finland July p Taskinen, J., Kortet, R. & Vainikka, A. 2004: Condition, sex hormones, sexual ornaments and parasite resistance in a fish. 10 th Jubilee Congress of the International Society of Behavioural Ecology, Jyväskylä, Finland July p Taskinen, J., Korkea-Aho, T., Partanen, J.M., Kortet, R. & Vainikka, A. 2004: Papilloma disease of roach (Rutilus rutilus): a tool for ecosystem health assesment in large lakes? XXIX Congress of the International Association of Theoretical and Applied Limnology SIL, 8-14 August 2004, Lahti, Finland. Book of Abstracts, p Vainikka, A., Kortet, R., Pirhonen, J. & Taskinen, J. 2004: Condition dependent sexual traits in tench (Tinca tinca L.). 10 th Jubilee Congress of the International Society of Behavioural Ecology, Jyväskylä, Finland July p Kortet, R., Vainikka, A. and Taskinen, J., 2002: Epidermic spawning papillomatosis in roach (Rutilus rutilus): sex and size dependence and between population differences. ICOPA X, Parasitology in a New World. Vancouver, Canada 4-9 August, p Rantala, M.J., Jokinen, I., Kortet, R. Vainikka A. & Suhonen, J. 2002: Pheromones and immunocompetence. First European Conference on Behavioral Biology, Conflict & Resolution. Münster, Germany July 31 st - August 4 th, p Kortet, R., Taskinen, J., Vainikka, A. & Ylönen, H. 2001: Role of breeding tubercles in intrasexual competition in male roach (Rutilus rutilus). XXVII International Ethological Conference, Tübingen, Germany August Advances in Ethology 36. Supplements to Ethology. p E) Popularization of science (31) 31. Vainikka, A. 2017: Tutkittua (research news). Vapaa-ajan Kalastaja, nro 3. in press. 30. Vainikka, A. & Olin, M. 2017: Tutkittua. Vapaa-ajan Kalastaja, nro Vainikka, A. 2017: Tutkittua. Vapaa-ajan Kalastaja, nro 1: Eronen, A., Strandberg, U., Hyvärinen, P., Härkönen, L. & Vainikka A. 2016: Viljelty ahven olisi terveellistä. Suomen Kalastuslehti, 123, Kotakorpi, M. & Vainikka A. 2016: Istutuksille on paikkansa kalavesien hoidossa. Online article at web pages of Finnish Federation for Recreational Fishing: Virkkunen, A., Kotakorpi, M. & Vainikka A. 2016: Kestävä hoitokalastus. Online article at web pages of Finnish Federation for Recreational Fishing: Heikinheimo, O. & Vainikka, A. 2015: Saaristomeren kuhat kutistuneet. Kalastaja, 39, 7. 12

13 24. Kuparinen, A., Uusi-Heikkilä, S. & Vainikka, A. 2015: Isoja emokaloja tarvitaan. Suomen Kalastuslehti, 122, Vainikka, A. & Heikinheimo, O. 2015: Saaristomeren kuha kutistuu. Suomen Kalastuslehti, 122, Heinonen, M., Vainikka, A. & Huuskonen, H. 2014: Kuha - Kiitollinen istutuskala vai troijalainen? Suomen Kalastuslehti, 121, Jussila, J. & Vainikka, A. 2014: RapuKamu suojelee jokirapua - Rapurutto on pahin vihollinen. Vapaa-ajankalastaja, nro 3: Vainikka, A. 2014: Kalan vapauttaminen osana ekologisesti kestävää vapakalastusta. Online article at web pages of Finnish Federation for Recreational Fishing: Vainikka, A. & Hyvärinen, P. 2014: Oulujärven taimenella on kasvupotentiaalia. Hauki-EM -lehti Vainikka, A., Kortet, R., Hyvärinen, P. & Piironen, J. 2014: Parhaat istukkaat ovat villien kaltaisia. Suomen Kalastuslehti, 121, Vainikka, A. & Saari, O. 2014: Kuhan monet kasvot: ylikalastettu arvokala vai yliarvostettu arvokalojen surma? Vapaa-ajan Kalastaja, nro 3: Ojaharju, J. & Vainikka, A. 2013: Merimetso ja kalakannat. Suomen Vapaa-ajan Online article at web pages of Finnish Federation for Recreational Fishing: Vainikka, A. & Ojaharju, J. 2013: Ei kala merestä kalastamalla lopu, vai loppuuko? Online article at web pages of Finnish Federation for Recreational Fishing: Vihtonen, M. & Vainikka, A. 2013: Vapaa-ajankalastaja virtavesien kunnostajana. Vapaa-ajan Kalastaja, nro Vainikka, A. & Hyvärinen, P. 2012: Kuhan alamitta - kädenvääntöä saaliin ja kuhan lisääntymisen välillä. Apaja nro 1, Hyvärinen, P. & Vainikka, A. 2012: Alamittaperusteinen kuhankalastus Oulujärvellä. Kalastaja 36 (nro 2): Vainikka, A. 2012: Tulisiko alamittoja nostaa vai poistaa ne kokonaan? Vapaa-ajan Kalastaja. Nro Vainikka, A. 2011: Vapaa-ajan kalastuksen järjestämisessä kalastajat ovat yhtä tärkeitä kuin kalat. Vapaa-ajan Kalastaja. Nro Vainikka, A. 2011: Uhanalaiset kalakannat Suomessa. Online article at web pages of Finnish Federation for Recreational Fishing: 8. Vainikka, A. 2010: Ovatko kaikki kalat yhtä helppoja pyydettäviä? Erä-lehti, nro Jussila, J., Kortet, R., Kokko, H., Henttonen, P., Makkonen, J. & Vainikka, A. 2010: Raputaudit haasteena. Suomen Kalastuslehti, 117: nro Kotakorpi, M., Kumpulainen, A. & Vainikka, A. 2007: Kalastusvalinta suosii vähätuottoisia kalakantoja - tulisiko isot kalat säästää? Suomen Kalastuslehti, 114: nro Vainikka, A., Korkea-aho, T., Kortet, R. & Taskinen, J. 2006: Särjen papillomatoosi vesistöjen tilan ilmentäjänä. Suomen Kalastuslehti, 113: nro Vainikka, A. 2005: Suutari vähän hyödynnetty arvokas luonnonvara. Suomen Kalastuslehti, 112: nro Vainikka, A. & Heikkilä J.J. 2005: Mateen pilkintää Pohjois-Päijänteellä Suomen kalastuslehti, 112: nro Vainikka, A. 2001: Unohdetut onkikalamme - esittelyssä suutari ja sorva. Kalamies nro Vainikka, A. 2000: Jokivesistön kunnostuksen mutkat ja tavoitteet. Uutis-Vainikkala 13

14 nro 9, s.10. G) Theses (2) 2. Vainikka, A. 2005: Mechanisms of honest sexual selection and life history trade-offs in three cyprinid fishes. PhD. thesis. Jyväskylä University Printing House, Jyväskylä. 53 p. 1. Vainikka, A. 2001: Testosteronin, estradiolin ja kortisolin pitoisuuden vuodenaikaisvaihtelu sekä suhde immuunipuolustukseen, lisääntymiseen ja kasvuun särjellä (Rutilus rutilus) MSc. thesis. University of Jyväskylä. I) Published computer software (1) 1. Vainikka, A : AV Bio-Statistics software package for biologists. Freely available at 14